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1

The Human Cell Atlas

Regev, Aviv, Teichmann, Sarah A, Lander, Eric S, Amit, Ido, Benoist, Christophe, Birney, Ewan, Bodenmiller, Bernd, Campbell, Peter, Carninci, Piero, Clatworthy, Menna, Clevers, Hans, Deplancke, Bart,

Journal:

Year:

2017

Language:

english

File:

PDF, 16.27 MB

english, 2017

2

Multiplexed mass cytometry profiling of cellular states perturbed by small-molecule regulators

Bodenmiller, Bernd, Zunder, Eli R, Finck, Rachel, Chen, Tiffany J, Savig, Erica S, Bruggner, Robert V, Simonds, Erin F, Bendall, Sean C, Sachs, Karen, Krutzik, Peter O, Nolan, Garry P

Journal:

Nature Biotechnology

Year:

2012

Language:

english

File:

PDF, 3.63 MB

english, 2012

3

Influence of node abundance on signaling network state and dynamics analyzed by mass cytometry

Lun, Xiao-Kang, Zanotelli, Vito R T, Wade, James D, Schapiro, Denis, Tognetti, Marco, Dobberstein, Nadine, Bodenmiller, Bernd

Journal:

Nature Biotechnology

Year:

2017

Language:

english

File:

PDF, 2.40 MB

english, 2017

4

Targeted suppression of an amyloidogenic transthyretin with antisense oligonucleotides

Merrill D. Benson, Barbara Kluve-Beckerman, Steven R. Zeldenrust, Angela M. Siesky, Diane M. Bodenmiller, Aaron D. Showalter, Kyle W. Sloop

Journal:

Year:

2006

Language:

english

File:

PDF, 268 KB

english, 2006

5

A platinum-based covalent viability reagent for single-cell mass cytometry

Harris G. Fienberg, Erin F. Simonds, Wendy J. Fantl, Garry P. Nolan, Bernd Bodenmiller

Journal:

Cytometry Part A

Year:

2012

Language:

english

File:

PDF, 1.57 MB

english, 2012

6

Dual Specificity Kinase DYRK3 Couples Stress Granule Condensation/Dissolution to mTORC1 Signaling

Wippich, Frank, Bodenmiller, Bernd, Trajkovska, Maria Gustafsson, Wanka, Stefanie, Aebersold, Ruedi, Pelkmans, Lucas

Journal:

Year:

2013

Language:

english

File:

PDF, 3.57 MB

english, 2013

7

Proteomics meets the scientific method

Picotti, Paola, Bodenmiller, Bernd, Aebersold, Ruedi

Journal:

Year:

2012

Language:

english

File:

PDF, 197 KB

english, 2012

8

Laser Ablation ICP-MS for Single-Cell-based Tissue Imaging

Schwarz, Gunnar, Wang, Hao A. O., Giessen, Charlotte, Schapiro, Denis, Hattendorf, Bodo, Bodenmiller, Bernd, Günther, Detlef

Journal:

CHIMIA International Journal for Chemistry

Year:

2015

Language:

english

File:

PDF, 218 KB

english, 2015

9

Simultaneous Multiplexed Imaging of mRNA and Proteins with Subcellular Resolution in Breast Cancer Tissue Samples by Mass Cytometry

Schulz, Daniel, Zanotelli, Vito Riccardo Tomaso, Fischer, Jana Raja, Schapiro, Denis, Engler, Stefanie, Lun, Xiao-Kang, Jackson, Hartland Warren, Bodenmiller, Bernd

Journal:

Year:

2018

Language:

english

File:

PDF, 141 KB

english, 2018

10

Capillary gas chromatographic assay of residual methenamine hippurate in equipment cleaning validation swabs

Tahseen Mirza, Ron C George, John R Bodenmiller, Stephen A Belanich

Journal:

Journal of Pharmaceutical and Biomedical Analysis

Year:

1998

Language:

english

File:

PDF, 131 KB

english, 1998

11

Cleaning level acceptance criteria and a high pressure liquid chromatography procedure for the assay of Meclizine Hydrochloride residue in swabs collected from pharmaceutical manufacturing equipment surfaces

Tahseen Mirza, Michael J Lunn, Frederick J Keeley, Ron C George, John R Bodenmiller

Journal:

Journal of Pharmaceutical and Biomedical Analysis

Year:

1999

Language:

english

File:

PDF, 118 KB

english, 1999

12

The HfaB and HfaD adhesion proteins of Caulobacter crescentus are localized in the stalk

Jennifer L. Cole, Gail G. Hardy, Diane Bodenmiller, Evelyn Toh, Aaron Hinz, Yves V. Brun

Journal:

Molecular Microbiology

Year:

2003

Language:

english

File:

PDF, 335 KB

english, 2003

13

SuperHirn – a novel tool for high resolution LC-MS-based peptide/protein profiling

Lukas N. Mueller, Oliver Rinner, Alexander Schmidt, Simon Letarte, Bernd Bodenmiller, Mi-Youn Brusniak, Olga Vitek, Ruedi Aebersold, Markus Müller

Journal:

Year:

2007

Language:

english

File:

PDF, 472 KB

english, 2007

14

Gamma-ray transitions in56Ni induced by the54Fe(3He,n)56Ni reaction

P. Schneider, A. Nagel, K. H. Bodenmiller, S. Buhl

Journal:

Zeitschrift für Physik A Hadrons and Nuclei

Year:

1972

Language:

english

File:

PDF, 217 KB

english, 1972

15

Spin assignment for the 1.89 MeV level in42Sc

H. U. Fahrbach, W. G. Alberts, K. H. Bodenmiller, S. Buhl

Journal:

Zeitschrift für Physik A Hadrons and Nuclei

Year:

1970

Language:

english

File:

PDF, 230 KB

english, 1970

16

Supplementary data concerning the58Ni(p, p′ γ) reaction

W. G. Alberts, K. H. Bodenmiller, S. Buhl

Journal:

Zeitschrift für Physik A Hadrons and Nuclei

Year:

1970

Language:

english

File:

PDF, 569 KB

english, 1970

17

Investigation of gamma-ray transitions in56Ni

P. Schneider, K. H. Bodenmiller, S. Buhl

Journal:

Zeitschrift für Physik A Hadrons and Nuclei

Year:

1975

Language:

english

File:

PDF, 346 KB

english, 1975

18

Investigation of excited states in56Co with the54Fe(3He,pγ)56Co reaction

W. D. Kampp, K. H. Bodenmiller, A. Nagel, S. Buhl

Journal:

Zeitschrift für Physik A Hadrons and Nuclei

Year:

1978

Language:

english

File:

PDF, 520 KB

english, 1978

19

Spin assignment for the 4.28 MeV level in48Ca by means of the48Ca (p, p′γ) reaction

K. H. Bodenmiller, S. Buhl, W. Kabsch

Journal:

Zeitschrift für Physik A Hadrons and Nuclei

Year:

1970

Language:

english

File:

PDF, 314 KB

english, 1970

20

NsrR targets in the Escherichia coli genome: new insights into DNA sequence requirements for binding and a role for NsrR in the regulation of motility

Jonathan D. Partridge, Diane M. Bodenmiller, Michael S. Humphrys, Stephen Spiro

Journal:

Molecular Microbiology

Year:

2009

Language:

english

File:

PDF, 427 KB

english, 2009

21

Orm family proteins mediate sphingolipid homeostasis

Breslow, David K., Collins, Sean R., Bodenmiller, Bernd, Aebersold, Ruedi, Simons, Kai, Shevchenko, Andrej, Ejsing, Christer S., Weissman, Jonathan S.

Journal:

Year:

2010

Language:

english

File:

PDF, 593 KB

english, 2010

22

PhosphoPep—a database of protein phosphorylation sites in model organisms

Bodenmiller, Bernd, Campbell, David, Gerrits, Bertran, Lam, Henry, Jovanovic, Marko, Picotti, Paola, Schlapbach, Ralph, Aebersold, Ruedi

Journal:

Nature Biotechnology

Year:

2008

Language:

english

File:

PDF, 304 KB

english, 2008

23

Reproducible isolation of distinct, overlapping segments of the phosphoproteome

Bodenmiller, Bernd, Mueller, Lukas N, Mueller, Markus, Domon, Bruno, Aebersold, Ruedi

Journal:

Year:

2007

Language:

english

File:

PDF, 414 KB

english, 2007

24

Quantitative phosphoproteome analysis using a dendrimer conjugation chemistry and tandem mass spectrometry

Tao, W Andy, Wollscheid, Bernd, O'Brien, Robert, Eng, Jimmy K, Li, Xiao-jun, Bodenmiller, Bernd, Watts, Julian D, Hood, Leroy, Aebersold, Ruedi

Journal:

Year:

2005

Language:

english

File:

PDF, 300 KB

english, 2005

25

PhosphoPep—a phosphoproteome resource for systems biology research in Drosophila Kc167 cells

Bodenmiller, Bernd, Malmstrom, Johan, Gerrits, Bertran, Campbell, David, Lam, Henry, Schmidt, Alexander, Rinner, Oliver, Mueller, Lukas N, Shannon, Paul T, Pedrioli, Patrick G

Journal:

Molecular Systems Biology

Year:

2007

Language:

english

File:

PDF, 315 KB

english, 2007

26

Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics

Mi-Youn Brusniak, Bernd Bodenmiller, David Campbell, Kelly Cooke, James Eddes, Andrew Garbutt, Hollis Lau, Simon Letarte, Lukas N Mueller, Vagisha Sharma, Olga Vitek, Ning Zhang, Ruedi Aebersold, Juli

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 4.07 MB

english, 2008

27

Novel Strategy Yields Candidate Gsh-1 Homeobox Gene Targets Using Hypothalamus Progenitor Cell Lines

Hung Li, Jeffrey J. Schrick, Gwen D. Fewell, Kevin L. MacFarland, David P. Witte, Diane M. Bodenmiller, H.-M. Hsieh-Li, C.-Y. Su, S.Steven Potter

Journal:

Developmental Biology

Year:

1999

Language:

english

File:

PDF, 465 KB

english, 1999

28

Regulation of PKD by the MAPK p38δ in Insulin Secretion and Glucose Homeostasis

Grzegorz Sumara, Ivan Formentini, Stephan Collins, Izabela Sumara, Renata Windak, Bernd Bodenmiller, Reshma Ramracheya, Dorothée Caille, Huiping Jiang, Kenneth A. Platt, Paolo Meda, Rudolf Aebersold,

Journal:

Year:

2009

Language:

english

File:

PDF, 1.75 MB

english, 2009

29

Full Dynamic Range Proteome Analysis of S. cerevisiae by Targeted Proteomics

Paola Picotti, Bernd Bodenmiller, Lukas N. Mueller, Bruno Domon, Ruedi Aebersold

Journal:

Year:

2009

Language:

english

File:

PDF, 1.42 MB

english, 2009

30

Phosphorylation of Nup98 by Multiple Kinases Is Crucial for NPC Disassembly during Mitotic Entry

Eva Laurell, Katja Beck, Ksenia Krupina, Gandhi Theerthagiri, Bernd Bodenmiller, Peter Horvath, Ruedi Aebersold, Wolfram Antonin, Ulrike Kutay

Journal:

Year:

2011

Language:

english

File:

PDF, 1.78 MB

english, 2011

31

Proteomics studies confirm the presence of alternative protein isoforms on a large scale

Michael L Tress, Bernd Bodenmiller, Ruedi Aebersold, Alfonso Valencia

Journal:

Year:

2008

Language:

english

File:

PDF, 2.80 MB

english, 2008

32

Phylogenetic Analysis of Hoxa 11 Sequences Reveals Absence of Transposable Elements, Conservation of Transcription Factor Binding Sites, and Suggests Antisense Coding Function

Bodenmiller, Diane M., Baxter, C. Stuart, Hansen, David V., Potter, S. Steven

Journal:

DNA Sequence - The Journal of Sequencing and Mapping

Year:

2002

Language:

english

File:

PDF, 510 KB

english, 2002

33

Rewiring of Genetic Networks in Response to DNA Damage

Bandyopadhyay, S., Mehta, M., Kuo, D., Sung, M.-K., Chuang, R., Jaehnig, E. J., Bodenmiller, B., Licon, K., Copeland, W., Shales, M., Fiedler, D., Dutkowski, J., Guenole, A., van Attikum, H., Shokat,

Journal:

Year:

2010

Language:

english

File:

PDF, 2.27 MB

english, 2010

34

Fast Chemical Imaging at High Spatial Resolution by Laser Ablation Inductively Coupled Plasma Mass Spectrometry

Wang, Hao A. O., Grolimund, Daniel, Giesen, Charlotte, Borca, Camelia N., Shaw-Stewart, James R. H., Bodenmiller, Bernd, Günther, Detlef

Journal:

Analytical Chemistry

Year:

2013

Language:

english

File:

PDF, 1.42 MB

english, 2013

35

Yeast Endosulfines Control Entry into Quiescence and Chronological Life Span by Inhibiting Protein Phosphatase 2A

Bontron, Séverine, Jaquenoud, Malika, Vaga, Stefania, Talarek, Nicolas, Bodenmiller, Bernd, Aebersold, Ruedi, De Virgilio, Claudio

Journal:

Year:

2013

Language:

english

File:

PDF, 671 KB

english, 2013

36

The Calcineurin Signaling Network Evolves via Conserved Kinase-Phosphatase Modules that Transcend Substrate Identity

Goldman, Aaron, Roy, Jagoree, Bodenmiller, Bernd, Wanka, Stefanie, Landry, Christian R., Aebersold, Ruedi, Cyert, Martha S.

Journal:

Year:

2014

Language:

english

File:

PDF, 3.99 MB

english, 2014

37

Development of Surface Adhesion in Caulobacter crescentus

Bodenmiller, D., Toh, E., Brun, Y. V.

Journal:

Journal of Bacteriology

Year:

2004

Language:

english

File:

PDF, 1.08 MB

english, 2004

38

Identification of Genes Required for Synthesis of the Adhesive Holdfast in Caulobacter crescentus

Smith, C. S., Hinz, A., Bodenmiller, D., Larson, D. E., Brun, Y. V.

Journal:

Journal of Bacteriology

Year:

2003

Language:

english

File:

PDF, 2.02 MB

english, 2003

39

Electron Transfer Dissociation in Conjunction with Collision Activation To Investigate the Drosophila melanogaster Phosphoproteome

Domon, Bruno, Bodenmiller, Bernd, Carapito, Christine, Hao, Zhiqi, Huehmer, Andreas, Aebersold, Ruedi

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 1.54 MB

english, 2009

40

An internal standardisation strategy for quantitative immunoassay tissue imaging using laser ablation inductively coupled plasma mass spectrometry

Frick, Daniel A., Giesen, Charlotte, Hemmerle, Teresa, Bodenmiller, Bernd, Günther, Detlef

Journal:

Journal of Analytical Atomic Spectrometry

Year:

2015

Language:

english

File:

PDF, 1.22 MB

english, 2015

41

[Methods in Enzymology] Guide to Yeast Genetics: Functional Genomics, Proteomics, and Other Systems Analysis Volume 470 || Quantitative Analysis of Protein Phosphorylation on a System-Wide Scale by Mass Spectrometry-Based Proteomics

Bodenmiller, Bernd

Year:

2010

Language:

english

File:

PDF, 518 KB

english, 2010

42

Determination of alkylbenzenesulfonate and alkylsulfate homologs, after electrophoretic separation using aqueous dioxane agarose gels

Bodenmiller, John R., Latz, Howard W.

Journal:

Analytical Chemistry

Year:

1972

Language:

english

File:

PDF, 628 KB

english, 1972

43

Comparison of MS 2 -Only, MSA, and MS 2 /MS 3 Methodologies for Phosphopeptide Identification

Ulintz, Peter J., Yocum, Anastasia K., Bodenmiller, Bernd, Aebersold, Ruedi, Andrews, Philip C., Nesvizhskii, Alexey I.

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 1.11 MB

english, 2009

44

An integrated chemical, mass spectrometric and computational strategy for (quantitative) phosphoproteomics: application to Drosophila melanogaster Kc167 cells

Bodenmiller, Bernd, Mueller, Lukas N., Pedrioli, Patrick G. A., Pflieger, Delphine, Jünger, Martin A., Eng, Jimmy K., Aebersold, Ruedi, Tao, W. Andy

Journal:

Molecular BioSystems

Year:

2007

Language:

english

File:

PDF, 694 KB

english, 2007

45

Automated identification of stratifying signatures in cellular subpopulations

Bruggner, R. V., Bodenmiller, B., Dill, D. L., Tibshirani, R. J., Nolan, G. P.

Journal:

Proceedings of the National Academy of Sciences

Year:

2014

Language:

english

File:

PDF, 1.54 MB

english, 2014

46

Practical Aspects and Considerations When Switching Between Continuous Subcutaneous Insulin Infusion and Multiple Daily Injections

Meneghini, Luigi, Sparrow-Bodenmiller, Jane

Journal:

Diabetes Technology & Therapeutics

Year:

2010

Language:

english

File:

PDF, 569 KB

english, 2010

47

Palladium-based mass tag cell barcoding with a doublet-filtering scheme and single-cell deconvolution algorithm

Zunder, Eli R, Finck, Rachel, Behbehani, Gregory K, Amir, El-ad D, Krishnaswamy, Smita, Gonzalez, Veronica D, Lorang, Cynthia G, Bjornson, Zach, Spitzer, Matthew H, Bodenmiller, Bernd, Fantl, Wendy J,

Journal:

Nature Protocols

Year:

2015

Language:

english

File:

PDF, 2.58 MB

english, 2015

48

Unraveling cell populations in tumors by single-cell mass cytometry

Di Palma, Serena, Bodenmiller, Bernd

Journal:

Current Opinion in Biotechnology

Year:

2015

Language:

english

File:

PDF, 1.44 MB

english, 2015

49

A luminal flavoprotein in endoplasmic reticulum-associated degradation

Riemer, J., Appenzeller-Herzog, C., Johansson, L., Bodenmiller, B., Hartmann-Petersen, R., Ellgaard, L.

Journal:

Proceedings of the National Academy of Sciences

Year:

2009

Language:

english

File:

PDF, 1.24 MB

english, 2009

50

The yjeB (nsrR) Gene of Escherichia coli Encodes a Nitric Oxide-Sensitive Transcriptional Regulator

Bodenmiller, D. M., Spiro, S.

Journal:

Journal of Bacteriology

Year:

2006

Language:

english

File:

PDF, 183 KB

english, 2006

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